J. Rydzewski, T. Gökdemir " Learning Markovian dynamics with spectral maps " J. Chem. Phys.160 (2024), 091102- DOI: 10.1063/5.0189241
J. Rydzewski "Spectral Map for Slow Collective Variables, Markovian Dynamics, and Transition State Ensembles" J. Chem. Theory Comput.20 (2024), 7775-7784 DOI: 10.1021/acs.jctc.4c00428
2023
Haider H. Dar, K. Mikulska-Rumińska, Yulia Y. Tyurina, Diane K. Luci, Adam Yasgar, Svetlana N. Samovich, Alexander A. Kapralov, Austin B. Souryavong, Vladimir A. Tyurin, Andrew A. Amoscato, Michael W. Epperly, Galina V. Shurin, Melissa Standley, Theodore R. Holman, Claudette M. St. Croix, Simon C. Watkins, Andrew P. VanDemark, Sandeep Rana, Alexey V. Zakharov, Anton Simeonov, Juan Marugan, Rama K. Mallampalli, Sally E. Wenzel, Joel S. Greenberger, Ganesha Rai, Hülya Bayir, Ivet Bahar, Valerian E. Kagan "Discovering selective antiferroptotic inhibitors of the 15LOX/PEBP1 complex noninterfering with biosynthesis of lipid mediators" PNAS120 (2023), e221889612 DOI: 10.1073/pnas.2218896120
A.A. Amoscato, T. Anthonymuthu, O. Kapralov, L.J. Sparvero, I.H. Shrivastava, K. Mikulska-Rumińska, V.A. Tyurin, A.A. Shvedova, Y.Y. Tyurina, I. Bahar, S. Wenzel, H. Bayir, V.E. Kagan "Formation of protein adducts with Hydroperoxy-PE electrophilic cleavage products during ferroptosis" Redox Biol.63 (2023), 102758 DOI: 10.1016/j.redox.2023.102758
J. Rydzewski "Selecting High-Dimensional Representations of Physical Systems by Reweighted Diffusion Maps" J. Phys. Chem. Lett.14 (2023), 2778-2783 DOI: 10.1021/acs.jpclett.3c00265
B. Niklas, J. Rydzewski, Bruno Lapied, W. Nowak "Toward Overcoming Pyrethroid Resistance in Mosquito Control: The Role of Sodium Channel Blocker Insecticides" Int. J. Mol. Sci.24(12) (2023), 10334 DOI: https://doi.org/10.3390/ijms241210334
2022
J. Rydzewski, K. Walczewska-Szewc, S. Czach, W. Nowak, Kuczera Krzysztof "Enhancing the Inhomogeneous Photodynamics of Canonical Bacteriophytochrome" J. Phys. Chem. B126 (2022), 2647-2657 DOI: 10.1021/acs.jpcb.2c00131
K. Walczewska-Szewc, J. Rydzewski, Lewkowicz Aneta "Inhibition-mediated changes in prolyl oligopeptidase dynamics possibly related to a-synuclein aggregation" Phys. Chem. Chem. Phys.24 (2022), 4366 -4373 DOI: 10.1039/D1CP05238A
S. Panezai, A. Jimenez Villar, Alba M. Paniagua Diaz, Augusto Arias, G. Gondek, Silvestre Manzanera, Pablo Artal, I. Grulkowski "Intraocular scatter compensation with spatial light amplitude modulation for improved vision in simulated cataractous eyes" Biomed. Opt. Express13 (2022), 2174-2185 DOI: https://doi.org/10.1364/BOE.451878
M. Lougdali, M. Zazoui, Y. Abboud, A. EL Bouari, A. Zawadzka, P. Płóciennik, J. Strzelecki, K. Strzałkowski, A. Migalska-Zalas, K. Waszkowska, B. Sahraoui, Y. El kouari "Linear and nonlinear optical properties of Manganese bis-(8- hydroxyquinoline) thin films for optoelectronic devices: experimental and computational studies" J. Mol. Struct.1249 (2022), 131558-131565 DOI: 10.1016/j.molstruc.2021.131558
P. Ossowski, Arkadiusz Kuś, Wojciech Krauze, S. Tamborski, Michał Ziemczonok, Łukasz Kuźbicki, M. Szkulmowski, Małgorzata Kujawińska "Near-infrared, wavelength, and illumination scanning holographic tomography" Biomed. Opt. Express13 (2022), 5971-5988 DOI: 10.1364/boe.468046
J. Rydzewski, Chen Ming, Ghosh Tushar, Valsson Omar "Reweighted Manifold Learning of Collective Variables from Enhanced Sampling Simulations" J. Chem. Theory Comput.18 (2022), 7179-7192 DOI: 10.1021/acs.jctc.2c00873
2021
B. Niklas, Milena Jankowska, Dalia Gordon, László Béress, Maria Stankiewicz, W. Nowak " Interactions of Sea Anemone Toxins with Insect Sodium Channel—Insights from Electrophysiology and Molecular Docking Studies " Molecules26 (5) (2021), 1302-1324 DOI: : https://www.mdpi.com/1420-3049/26/5/1302
Dariusz Laskowski, J. Strzelecki, Hanna Dahm, A. Balter "Adhesion heterogeneity of individual bacterial cells in an axenic culture studied by atomic force microscopy" Environ. Microbiol. Rep.13(5) (2021), 668-674 DOI: https://doi.org/10.1111/1758-2229.12978
Jan K. Nowak, Robert Nowak, Kacper Radzikowski, I. Grulkowski, Jarosław Walkowiak "Automated bowel sound analysis: an overview" Sensors21 (2021), 5294-5294 DOI: 10.3390/s21165294
Młyniuk Patryk, Stachura Joanna, A. Jimenez Villar, I. Grulkowski, Kałużny Bartłomiej "Changes in the geometry of modern daily disposable soft contact lenses during wear" Sci. Rep.11 (2021), 12460-12460 DOI: 10.1038/s41598-021-91779-y
Yuanyuan Xia, Xiaoyu Li, Linli Yang, Xiaozhou Luo, Wei Shen, Yu Cao, Ł. Pepłowski, Xianzhong Chen "Development of thermostable sucrose phosphorylase by semi-rational design for efficient biosynthesis of alpha-D-glucosylglycerol" Appl. Microbiol. Biotechnol.105 (2021), 7309-7319 DOI: https://doi.org/10.1007/s00253-021-11551-0
Paniagua-Diaz Alba M., A. Jimenez Villar, I. Grulkowski, Artal Pablo "Double-pass wavefront shaping for scatter correction in a cataract’s model" Opt. Express29 (2021), 42208-42214 DOI: 10.1364/OE.442286
Junling Guo, Zhongyi Cheng, J. Berdychowska, Xiaonan Zhu, Lingling Wang, Ł. Pepłowski, Zhemin Zhou "Effect and mechanism analysis of different linkers on efficient catalysis of subunit-fused nitrile hydratase" Int. J. Biol. Macromol.181 (2021), 444-451 DOI: https://doi.org/10.1016/j.ijbiomac.2021.03.103
Chen Yiwei , Manzanera Silvestre , Mompeán Juan, D. Rumiński, I. Grulkowski, Pablo Artal "Increased crystalline lens coverage in optical coherence tomography with oblique scanning and volume stitching" Biomed. Opt. Express12(3) (2021), 1529-1542 DOI: 10.1364/BOE.418051
J. Rydzewski, Valsson Omar "Multiscale Reweighted Stochastic Embedding: Deep Learning of Collective Variables for Enhanced Sampling" J. Phys. Chem. A125 (2021), 6286-6302 DOI: 10.1021/acs.jpca.1c02869
K. Mikulska-Rumińska, Tamil S Anthonymuthu, Anastasia Levkina, Indira H Shrivastava, Aleksandr A Kapralov, Hülya Bayır, Valerian E Kagan, Ivet Bahar "NO● Represses the Oxygenation of Arachidonoyl PE by 15LOX/PEBP1: Mechanism and Role in Ferroptosis " Int. J. Mol. Sci.22 (2021), 5253 DOI: 10.3390/ijms22105253
W. Sun, V. Tyurin, K. Mikulska-Rumińska, I. Shrivastava, T. Anthonymuthu, Y. Zhai, M. Pan, H. Gong, D. Lu, J. Sun, W. Duan, S. Korelov, A. Abramov, P. Angelova, I. Miller, O. Baharier, G. Mao, H. Dar, A. Kapralov, A. Amoscato, T. Hastings, T. Greenamyre, C. Chu, Y. Sadovsky, I. Bahar, H. Bayir, Y. Tyurina, R. He, V. Kagan "Phospholipase iPLA2β averts ferroptosis by eliminating a redox lipid death signal" Nat. Chem. Biol.17 (2021), 465-476 DOI: 10.1038/s41589-020-00734-x
K. Walczewska-Szewc, W. Nowak "Photo-Switchable Sulfonylureas Binding to ATP-Sensitive Potassium Channel Reveal the Mechanism of Light-Controlled Insulin Release" J. Phys. Chem. B125, 48 (2021), 13111-13121 DOI: 10.1021/acs.jpcb.1c07292
K.Waszkowska, Y.Cheret, A. Zawadzka, A. Korcala, J. Strzelecki, A.El-Ghayoury, A.Migalska-Zalas, B.Sahraoui "Photoluminescence and Nonlinear Optical Properties of Triple Stranded Helicates Based Metallo-supramolecular Architectures" Dyes Pigm.186 (2021), 109036 DOI: 10.1016/j.dyepig.2020.109036
Młyniuk Patryk, E. Mączyńska-Walkowiak, Rzeszewska-Zamiara Jagoda, I. Grulkowski, Kałużny Bartłomiej J. "Probing biomechanical properties of the cornea with air-puff-based techniques – an overview" Adv. Opt. Technol.10 (2021), 375-391 DOI: 10.1515/aot-2021-0042
She Zhang, James M Krieger, Yan Zhang, Cihan Kaya, Burak Kaynak, K. Mikulska-Rumińska, Pemra Doruker, Hongchun Li, Ivet Bahar "ProDy 2.0: Increased Scale and Scope after 10 Years of Protein Dynamics Modelling with Python" Bioinf.Z (2021), X-Y DOI: 10.1093/bioinformatics/btab187
Joanna Grzyb, K. Walczewska-Szewc, Jakub Sławski, Martyna Trojnar "Quantum Dots Clusters as Self-Assembled Antennae with Phycocyanine and Phycobilisomes as Energy Acceptors" Phys. Chem. Chem. Phys.23 (2021), 24505 -24517 DOI: 10.1039/d1cp03347f
Jargalsaikhan Dagvadorj, K. Mikulska-Rumińska, Gantsetseg Tumurkhuu, Rojo A. Ratsimandresy, Jessica Carriere, Allen M. Andres, Stefanie Marek-Iannucci, Yang Song, Shuang Chen, Malcolm Lane, Andrea Dorfleutner, RobertaA. Gottlieb, Christian Stehlik, Suzanne Cassel, Fayyaz S. Sutterwala, Ivet Bahar, Timothy R. Crother, Moshe Arditi "Recruitment of pro-IL-1a to Mitochondrial Cardiolipin, via shared LC3 Binding Domain, Inhibits Mitophagy and Drives NLRP3 Activation" PNAS118 (2021), e201563211 DOI: 10.1073/pnas.2015632118
T. Anthonymuthu, Y.Tyurina, W. Sun, K. Mikulska-Rumińska, I. Shrivastava, V. Tyurin, F. Cinemre, H. Dar, A. VanDemark, T. Holman, Y. Sadovsky, B. Stockwell, R. He, I. Bahar, H. Bayır, V. Kagan "Resolving the paradox of ferroptotic cell death: ferrostatin-1 binds to 15LOX/PEBP1 complex, suppresses generation of peroxidized ETE-PE, and protects against ferroptosis" Redox Biol.38 (2021), 101744 DOI: 10.1016/j.redox.2020.101744
Stachura Joanna, Młyniuk Patryk, Bloch Waldemar, A. Jimenez Villar, I. Grulkowski, Kałużny Bartłomiej "Shape of the anterior surface of the cornea after extended wear of silicone hydrogel soft contact lenses" Ophthal. Physl. Opt.41 (2021), 683-690 DOI: 10.1111/opo.12830
Yan Zhang, James Krieger, K. Mikulska-Rumińska, Burak Kaynak, Carlos Oscar S Sorzano, José-María Carazo, Jianhua Xing, Ivet Bahar "State-dependent sequential allostery exhibited by chaperonin TRiC/CCT revealed by network analysis of Cryo-EM maps" Prog. Biophys. Mol. Biol.160 (2021), 104-120 DOI: 10.1016/j.pbiomolbio.2020.08.006
D. Rumiński, Sebag J, Toledo RD, A. Jimenez Villar, Nowak JK, Manzanera S, Artal P, I. Grulkowski "Volumetric Optical Imaging and Quantitative Analysis of Age-Related Changes in Anterior Human Vitreous" Invest. Ophthal. Vis. Science62(4) (2021), 31-31 DOI: 10.1167/iovs.62.4.31
Ana Rodríguez-Aramendía, Fernando Díaz-Doutón, José Fernández-Trullàs, Pol Falgueras, Laura González, Jaume Pujol, I. Grulkowski, José Luis Güell "Whole anterior segment and retinal swept source OCT for comprehensive ocular screening" Biomed. Opt. Express12 (2021), 1263-1278 DOI: 10.1364/BOE.414592
2020
B. J. Kaluzny, J. Stachura, P. Mlyniuk, A. Jimenez Villar, M. Wietlicka-Piszcz , I. Grulkowski "Change in the geometry of positive and negative powered soft contact lenses during wear" PLOS ONE15(11) (2020), e0242095-e0242095 DOI: https://doi.org/10.1371/journal.pone.0242095
Zhongyi Cheng, Yao Lan, Junling Guo, Dong Ma, Shijin Jiang, Qianpeng Lai, Zhemin Zhou, Ł. Pepłowski "Computational Design of Nitrile Hydratase from Pseudonocardia thermophila JCM3095 for Improved Thermostability" Molecules25(20) (2020), 1-18 DOI: 10.3390/molecules25204806
Jakub Dąbrowski, W. Nowak, Arkadiusz Ptak "How strong are hydrogen bonds in the peptide model?" Phys. Chem. Chem. Phys.22 (2020), 1392-1399 DOI: https://doi.org/10.1039/C9CP05564A
A. Gupta, D. Rumiński, A. Jimenez Villar, Raúl Duarte Toledo, Dr. Silvestre Manzanera, S. Panezai, Dr. Juan Mompean, Dr. Pablo Artal, I. Grulkowski "In vivo SS-OCT imaging of crystalline lens sutures" Biomed. Opt. Express11, issue 10 (2020), 5388-5400 DOI: https://doi.org/10.1364/BOE.401254
Eléonore Moreau, K. Mikulska-Rumińska, Mathilde Goulu, Stéphane Perrier, Caroline Deshayes, Maria Stankiewicz, Véronique Apaire-Marchais, W. Nowak, Bruno Lapied "Orthosteric muscarinic receptor activation by the insect repellent IR3535 opens new prospects in insecticide-based vector control" Sci. Rep.10 (2020), 1-15 DOI: 10.1038/s41598-020-63957-x
Alexandr Kapralov, Qin Yang, Haider Dar, Yulia Tyurina, Tamil Anthonymuthu, Rina Kim , Claudette Croix, K. Mikulska-Rumińska, Bing Liu, Indira Shrivastava, Vladimir Tyurin, Hsiu-Chi Ting, Yijen Wu, Yuan Gao, Galina Shurin, Margarita Artyukhova, Liubov Ponomareva, Peter Timashev, Rosario Domingues, Detcho Stoyanovsky, Jeol Greenberger, Rama Mallampalli, Ivet Bahar, Dmitry Gabrilovich, Hülya Bayır, Valerian Kagan "Redox lipid reprogramming commands susceptibility of macrophages and microglia to ferroptotic death" Nat. Chem. Biol.16 (2020), 278-290
Jan Krzysztof Nowak, Łukasz Kałużny, Wojciech Suda, Anna Bukowska-Posadzy, Alex Adams, I. Grulkowski, Jarosław Kocięcki, Jarosław Walkowiak "Retinal nerve fiber layer thickness associates with phenylketonuria control and cognition" J. Med. Genet.57 (2020), 863-864 DOI: 10.1136/jmedgenet-2019-106770
K. Walczewska-Szewc, W. Nowak "Structural Determinants of Insulin Release: Disordered N-Terminal Tail of Kir6.2 Affects Potassium Channel Dynamics Through Interactions With Sulfonylurea Binding Region in a SUR1 Partner" J. Phys. Chem. B 124, 29 (2020), 6198-6211 DOI: 10.1021/acs.jpcb.0c02720
A. Aamoum, K. Waszkowska, S. Taboukhat, P. Płóciennik, M. Bakasse, Y. Boughaleb, J. Strzelecki, A. Korcala, Z. Sofiani, A. Zawadzka "Time-resolved photoluminescence and optical properties of a specific organic azo dye" Opt. Quantum Electron.52 (2020), 35 DOI: 10.1007/s11082-019-2147-7
2019
Marta Stawczyk‐Macieja , Katarzyna Wertheim‐Tysarowska , Rafał Jakubowski , Aneta Szczerkowska‐Dobosz , Magdalena Krygier , Aleksandra Wilkowska , Justyna Sawicka , W. Nowak, Jerzy Bal , Roman Nowicki "A novel de novo mutation p.Ala428Asp in KRT5 gene as a cause of localized epidermolysis bullosa simplex." EXP DERMATOL28(10) (2019), 1131-1134 DOI: 10.1111/exd.13788
E. Mączyńska-Walkowiak, Rzeszewska-Zamiara Jagoda, A. Jimenez Villar, M. Wojtkowski, Kałużny Bartłomiej, I. Grulkowski "Air-Puff-Induced Dynamics of Ocular Components Measured with Optical Biometry" Invest. Ophthal. Vis. Science60 (2019), 1979-1986 DOI: 10.1167/iovs.19-26681
E. Mączyńska-Walkowiak, K. Karnowski, K. Szulżycki, Malinowska Monika, Doleżyczek Hubert, Cichański Artur, M. Wojtkowski, Kałużny Bartlomiej, I. Grulkowski "Assessment of the influence of viscoelasticity of cornea in animal ex vivo model using air-puff optical coherence tomography and corneal hysteresis" J. Biophotonics12 (2019), e201800154-e201800154 DOI: 10.1002/jbio.201800154
P. Młyniuk, J. Stachura, A. Jimenez Villar, I. Grulkowski, B. Kałużny "Changes of the curvature of modern daily disposable soft contact lenses during wear" Contact Lens Anterior Eye42(6) (2019), e8 DOI: 10.1016/j.clae.2019.10.027
K. Mikulska-Rumińska, Indira Shrivastava, James Krieger, She Zhang, Hongchun Li, Hülya Bayır, Sally Wenzel, Andrew VanDemark, Valerian Kagan, Ivet Bahar "Characterization of Differential Dynamics, Specificity, and Allostery of Lipoxygenase Family Members" J. Chem. Inf. Model.59 (2019), 2496-2508
K. Mikulska-Rumińska, J. Strzelecki, W. Nowak "Dynamics, nanomechanics and signal transduction in reelin repeats" Sci. Rep.9 (2019), 1-13
J. Rydzewski, Omar Valsson "Finding Multiple Reaction Pathways of Ligand Unbinding" J. Chem. Phys.150 (2019), 221101- DOI: 10.1063/1.5108638
A. Jimenez Villar, E. Mączyńska-Walkowiak, Artur Cichański, M. Wojtkowski, Bartłomiej Kałużny, I. Grulkowski "High-speed OCT-based ocular biometer combined with an air-puff system for determination of induced retraction-free eye dynamics" Biomed. Opt. Express10 (2019), 3663-3680 DOI: https://doi.org/10.1364/BOE.10.003663
J. Rydzewski "maze: Heterogeneous ligand unbinding along transient protein tunnels" Comp. Phys. Commun. (2019), 106865-106873 DOI: 10.1016/j.cpc.2019.106865
Yuanyuan Xia, Ł. Pepłowski, Zhongyi Cheng, Tianyi Wang, Zhongmei Liu, Wenjing Cui, Michihiko Kobayashi, Zhemin Zhou "Metallochaperone Function of the Self-Subunit Swapping Chaperone Involved in the Maturation of Subunit-Fused Cobalt Type Nitrile Hydratase." Biotechnol. Bioeng.116(3) (2019), 481-489 DOI: 10.1002/bit.26865
Juan Francisco Carrascoza Mayén, J. Rydzewski, Natalia Szostak, Jacek Blazewicz, W. Nowak "Prebiotic Soup Components Trapped in Montmorillonite Nanoclay Form New Molecules: Car-Parrinello Ab Initio Simulations" Life9 (2019), 46-54 DOI: doi:10.3390/life9020046
Pavel Banáš, Alessandro Barducci, Mattia Bernetti, Peter G. Bolhuis, Max Bonomi, Sandro Bottaro, Davide Branduardi, Giovanni Bussi, Carlo Camilloni, Riccardo Capelli, Paolo Carloni, Michele Ceriotti, Andrea Cesari, Haochuan Chen, Wei Chen, Francesco Colizzi, Sandip De, Marco DeLaPierre, Davide Donadio, Viktor Drobot, Bernd Ensing, Andrew Ferguson, Marta Filizola, James Fraser, Haohao Fu, Piero Gasparotto, Francesco Luigi Gervasio, Federico Giberti, Alejandro Gil-Ley, Toni Giorgino, Gabriella T. Heller, Glen M. Hocky, Marcella Iannuzzi, Michele Invernizzi, Kim Jelfs, Alexander Jussupow, Evgeny Kirilin, Alessandro Laio, Vittorio Limongelli, Kresten Lindorff-Larsen, Thomas Löhr, Fabrizio Marinelli, Layla Martin-Samos, Matteo Masetti, Ralf Meyer, Angelos Michaelides, Carla Molteni, Tetsuya Morishita, Marco Nava, Cristina Paissoni, Elena Papaleo, Michele Parrinello, Jim Pfaendtner, Pablo Piaggi, GiovanniMaria Piccini, Adriana Pietropaolo, Fabio Pietrucci, Silvio Pipolo, Davide Provasi, David Quigley, Paolo Raiteri, Stefano Raniolo, J. Rydzewski, Matteo Salvalaglio, Gabriele Cesare Sosso, Vojtech Spiwok, Jiří Šponer, David W. H. Swenson, Pratyush Tiwary, Gareth Tribello, Omar Valsson, Michele Vendruscolo, Gregory A. Voth, Andrew White "Promoting transparency and reproducibility in enhanced molecular simulations" Nat. Methods16 (2019), 670-673 DOI: https://doi.org/10.1038/s41592-019-0506-8
H. Dar, Y. Tyurina, K. Mikulska-Rumińska, I. Shrivastava, H. Ting, A. Tyurin, J. Krieger, C. Croix, S. Watkins, E. Bayir, G. Mao, C. Ambruster, A. Kapralov, H. Wang, M. Parsek, T. Anthonymuthu, A. Ogunsola, B. Flitter, C. Freedman, J. Gaston, T. Holman, J. Pilewski, J. Greenberger, R. Mallampalli, Y. Doi, J. Lee, I. Bahar, J. Bomberger, H. Bayır, V. Kagan "Pseudomonas aeruginosa utilizes host polyunsaturated phosphatidylethanolamines to trigger theft-ferroptosis in bronchial epithelium" J. Clin. Invest.128 (2019), 4639-4653 DOI: https://doi.org/10.1172/JCI99490
K. Walczewska-Szewc, W. Nowak "Spacial models of malfunctioned protein complexes help to elucidate signal transduction critical for insulin release" Biosystems177 (2019), 48-55 DOI: https://doi.org/10.1016/j.biosystems.2018.11.001
Renata Gadzała-Kopciuch, Katarzyna Kwaśniewska, Agnieszka Ludwiczak, Piotr Skrzyniarz, R. Jakubowski, W. Nowak, Andrzej Wojtczak, Bogusław Buszewski "Towards A New Approach for the Description of Cyclo–2,4-Dihydroxybenzoate, A Substance Which Effectively Mimics Zearalenone in Imprinted Polymers Designed for Analyzing Selected Mycotoxins in Urine" Int. J. Mol. Sci.20(7) (2019), 1588-1610 DOI: https://doi.org/10.3390/ijms20071588
D. Rumiński, Palczewska Grazyna, Nowakowski Maciej, A. Zielińska, Kefalov Vladimir, K. Komar, Palczewski Krzysztof, Wojtkowski Maciej "Two-photon microperimetry: sensitivity of human photoreceptors to infrared light" Biomed. Opt. Express10 (2019), 4551-4567 DOI: doi.org/10.1364/BOE.10.004551
2018
Anna Kutkowska-Kaźmierczak, Małgorzata Rydzanicz, Aleksander Chlebowski, Kamila Kłosowska-Kosicka, Adriana Mika, Jakub Gruchota, Elżbieta Jurkiewicz, Cezary Kowalewski, Agnieszka Pollak, Teresa Joanna Stradomska, Tomasz Kmieć, R. Jakubowski, Piotr Gasperowicz, Anna Walczak, Dariusz Śladowski, Ewa Jankowska-Steifer, Lech Korniszewski, Joanna Kosińska, Ewa Obersztyn, W. Nowak, Tomasz Śledziński, Andrzej Dziembowski, Rafał Płoski, 22 "Dominant ELOVL1 mutation causes neurological disorder with ichthyotic keratoderma, spasticity, hypomyelination and dysmorphic features" J. Med. Genet.55(6) (2018), 408-414 DOI: http://dx.doi.org/10.1136/jmedgenet-2017-105172
dr Laskowski Dariusz, J. Strzelecki, K. Pawlak, prof. dr hab. Dahm Hanna, A. Balter "Effect of ampicillin on adhesive properties of bacteria examined by atomic force microscopy" Micron112 (2018), 84- 90 DOI: 10.1016/j.micron.2018.05.005
Anthonymuthu, Tamil S, Kenny, Elizabeth M. , Shrivastava, Indira, Tyurina, Yulia Y, Hier, Zachary E. , Ting, Hsiu-Chi , Dar, Haider H , Tyurin, Vladimir A. , Nesterova, Anastasia , Amoscato, Andrew A. , K. Mikulska-Rumińska, Rosenbaum, Joel C. , Mao, Gaowei, Zhao, Jinming, Conrad, Marcus , Kellum, John A. , Wenzel, Sally E. , VanDemark, Andrew P. , Bahar, Ivet , Kagan, Valerian E., Bayir, Hülya "Empowerment of 15-Lipoxygenase Catalytic Competence in Selective Oxidation of Membrane ETE-PE to Ferroptotic Death Signals, HpETE-PE" J. Am. Chem. Soc.140 (2018), 17835-17839
Z. Cheng, Ł. Pepłowski, W. Cui, Y. Xia, Z. Liu, J. Zhang , M. Kobayashi, Z. Zhou "Identification of Key Residues Modulating the Stereoselectivity of Nitrile Hydratase towards rac-Mandelonitrile by Semi-rational Engineering." Biotechnol. Bioeng.115(3) (2018), 524-535 DOI: 10.1002/bit.26484
K. Karnowski, E. Mączyńska-Walkowiak, M. Nowakowski, Kałużny Bartłomiej, I. Grulkowski, M. Wojtkowski "Impact of diurnal IOP variations on the dynamic corneal hysteresis measured with air-puff swept-source OCT" Photonics Lett. Poland10 (2018), 64-66 DOI: 10.4302/plp.v10i3.848
Y. Xia, W. Cui, Z. Cheng, Ł. Pepłowski, Z. Liu, M. Kobayashi, Z. Zhou "Improving Thermostability and Catalytic Efficiency of the Subunit-Fused Nitrile Hydratase by Semi-Rational engineering" ChemCatChem10(6) (2018), 1370-1375 DOI: 10.1002/cctc.201701374
J. Rydzewski, dr inż. Rafał Jakubowski, W. Nowak, prof. Helmut Grubmueller "Kinetics of Huperzine A Dissociation from Acetylcholinesterase via Multiple Unbinding Pathways" J. Chem. Theory Comput. 14 (6) (2018), 2843- 2851 DOI: DOI: 10.1021/acs.jctc.8b00173
Z. Cheng, W. Cui, Y. Xia, Ł. Pepłowski, M. Kobayashi, Z. Zhou "Modulation of NHase Regioselectivity towards Dinitriles by Tailoring the Substrate Binding Pocket Residues" ChemCatChem10(2) (2018), 449-458 DOI: 10.1002/cctc.201701170
J. Rydzewski, W. Nowak "Photoinduced Transport in an H64Q Neuroglobin Antidote for Carbon Monoxide Poisoning" J. Chem. Phys.148(11) (2018), 115101- DOI: https://doi.org/10.1063/1.5013659
K. Szulżycki, V. Savaryn, I. Grulkowski "Rapid acousto-optic focus tuning for improvement of imaging performance in confocal microscopy" Appl. Opt.57 (2018), C14-C18 DOI: 10.1364/AO.57.000C14
P. Ossowski, A. Curatolo, D. D. Sampson, P. RT Munro "Realistic simulation and experiment reveals the importance of scatterer microstructure in optical coherence tomography image formation" Biomed. Opt. Express9 (2018), 3122-3136 DOI: 10.1364/BOE.9.003122
I. Grulkowski, Manzanera Silvestre, Sobczuk Franciszek, Karnowski Karol, Artal Pablo "Swept source OCT and tunable lens technology for comprehensive imaging and biometry of the whole eye" Optica5 (2018), 52-59 DOI: 10.1364/OPTICA.5.000052
A. de Castro, A. Benito, S. Manzanera, J. Mompean, B. Canizares, D. Martinez, J. M. Marin, I. Grulkowski, P. Artal "Three-dimensional Cataract Crystalline Lens Imaging with Swept-Source Optical Coherence Tomography" Invest. Ophthal. Vis. Science59 (2018), 897-903 DOI: 10.1167/iovs.17-23596
Bo Wang, Katie Lucy, Joel Schuman, Ian Sigal, Richard Bilonick, Chen Lu, Jonathan Liu, I. Grulkowski, Zachary Nadler, Hiroshi Ishikawa, Larry Kagemann, James Fujimoto, Gadi Wollstein "Tortuous Pore Path Through the Glaucomatous Lamina Cribrosa" Sci. Rep.8 (2018), 7281-7281 DOI: 10.1038/s41598-018-25645-9
Palczewska Grażyna, P. Stremplewski, Suh Susie , Alexander Nathan , Salom David , Dong Zhiqian , D. Rumiński, Choi Elliot H , Sears Avery E , Kern Timothy S , M. Wojtkowski, Palczewski Krzysztof "Two-photon imaging of the mammalian retina with ultrafast pulsing laser" J. Clin. Invest.3(17) (2018), 1-18 DOI: 10.1172/jci.insight.121555
I. Grulkowski, Manzanera Silvestre, Mompean Juan, de Castro Alberto, Marin Jose Maria, Artal Pablo "Volumetric assessment of lens opacities in cataract patients using long-depth-range swept source optical coherence tomography" Biomed. Opt. Express9 (2018), 3821-3833 DOI: 10.1364/BOE.9.003821
I. Grulkowski, Manzanera Silvestre, Mompean Juan, de Castro Alberto, Marin Jose Maria, Artal Pablo "Volumetric macro- and micro-scale assessment of crystalline lens opacities in cataract patients using long-depth-range swept source optical coherence tomography" Biomed. Opt. Express9 (2018), 3821-3833 DOI: 10.1364/BOE.9.003821
2017
Katarzyna Roszek, Noemi Makowska, Joanna Czarnecka, Dorota Porowińska, M. Dąbrowski, Justyna Danielewska, W. Nowak "Canine Adipose‐Derived Stem Cells: Purinergic Characterization and Neurogenic Potential for Therapeutic Applications" J. Cell. Biochem. 118(1) (2017), 58-65 DOI: 10.1002/jcb.25610
P. Ossowski, M. Wojtkowski, dr Peter RT Munro "Classification of biological micro-objects using optical coherence tomography: in silico study" Biomed. Opt. Express8 (2017), 3606-3626 DOI: 10.1364/BOE.8.003606
J. Rydzewski, W. Nowak "Ligand diffusion in proteins via enhanced sampling in molecular dynamics" Phys. Life Rev. 22-23 (2017), 58- 74 DOI: 10.1016/j.plrev.2017.03.003
K. Mikulska-Rumińska, A. J. Kulik, C. Benadiba, I. Bahar, G. Dietler, W. Nowak "Nanomechanics of multidomain neuronal cell adhesion protein contactin revealed by single molecule AFM and SMD" Sci. Rep.7 (2017), 1-11 DOI: 10.1038/s41598-017-09482
S.E. Wenzel, Y.Y. Tyurina, J. Zhao, C.M. St. Croix, H.H. Dar, G. Mao, V.A. Tyurin, T.S. Anthonymuthu, A.A. Kapralov, A.A. Amoscato, K. Mikulska-Rumińska, I.H. Shrivastava, E.M. Kenny, Q. Yang, J.C. Rosenbaum, L.J. Sparvero, D.R. Emlet, X. Wen, Y. Minami, F. Qu, S.C. Watkins, T.R. Holman, A.P. van Demark, J.A. Kellum, I. Bahar, H. Bayir, V.A. Kagan "PEBP1 Wardens Ferroptosis by Enabling Lipoxygenase Generation of Lipid Death Signals" Cell171 (2017), 628-641
J. Rydzewski, W. Nowak "Rare-event sampling in ligand diffusion: Reply to comments on “Ligand diffusion in proteins via enhanced sampling in molecular dynamics”" Phys. Life Rev.22-23 (2017), 82- 85 DOI: 10.1016/j.plrev.2017.08.011
Katie A. Lucy, Bo Wang, Joel S. Schuman, Richard A. Bilonick, Yun Ling, Larry Kagemann, Ian A. Sigal, I. Grulkowski, Jonathan J. Liu, James G. Fujimoto, Hiroshi Ishikawa, Gadi Wollstein "Thick Prelaminar Tissue Decreases Lamina Cribrosa Visibility" Invest. Ophthal. Vis. Science58 (2017), 1751-1757 DOI: 10.1167/iovs.16-20784
2016
J. Rydzewski, R. Jakubowski, prof. Giuseppe Nicosia, W. Nowak "Conformational sampling of a biomolecular rugged energy landscape" IEEE/ACM Trans. Comput. Biol. (2016), - DOI: 10.1109/TCBB.2016.2634008
K. Szulżycki, V. Savaryn, I. Grulkowski "Generation of dynamic Bessel beams and dynamic bottle beams using acousto-optic effect" Opt. Express24 (2016), 23977-23991 DOI: 10.1364/OE.24.023977
J. Rydzewski, W. Nowak "Machine learning based dimensionality reduction facilitates ligand diffusion paths assessment: a case of cytochrome P450cam" J. Chem. Theory Comput. (2016), - DOI: 10.1021/acs.jctc.6b00212
K. Pawlak, J. Strzelecki "Nanopuller - Open data acquisition platform for AFM force spectroscopy experiments" Ultramicroscopy164 (2016), 17-23 DOI: 10.1016/j.ultramic.2016.01.008
M. Szkulmowski, D. Rumiński, Paweł Liskowski, Bartosz Wieloch, Krzysztof Krawiec, Bartosz Sikorski, M. Wojtkowski "OCT retinal angiography using neural networks" Invest. Ophthal. Vis. Science57 (2016), 454-454
P. Płóciennik, D. Guichaoua, A. Zawadzka, A. Korcala, J. Strzelecki, P. Trzaska, B. Sahraoui "Optical properties of MgO thin films grown by laser ablation technique" Opt. Quantum Electron.48 (2016), 277-1-277-12 DOI: 10.1007/s11082-016-0536-8
A. Gogolińska, R. Jakubowski, W. Nowak "Petri nets formalism facilitates analysis of complex biomolecular structural data" Rairo-Oper. Res. 50 (2016), 401-411 DOI: http://dx.doi.org/10.1051/ro/2015043
2015
M. Dąbrowski, Katarzyna Roszek, J. Strzelecki, Maria Stankiewicz, W. Nowak "Afm Monitoring of Elasticity Changes Accompanying Differentiation Towards Neural Cells" Biophys. J. Suppl. 108 (2015), 169a-169a DOI: http://dx.doi.org/10.1016/j.bpj.2014.11.934
P. Ossowski, A. Raiter-Smiljanic, A. Szkulmowska, D. Bukowska, M. Wiese, L. Derzsi, A. Eljaszewicz, P. Garstecki, M. Wojtkowski "Differentiation of morphotic elements in human blood using optical coherence tomography and a microfluidic setup" Opt. Express23 (2015), 27724-27738 DOI: 10.1364/OE.23.027724
J. Rydzewski, R. Jakubowski, W. Nowak "Entropic measure to prevent energy over-minimization in molecular dynamics simulations" J. Chem. Phys.143(19) (2015), 171103 DOI: 10.1063/1.4935370
J. Rydzewski, W. Nowak, Giussepe Nicosia "Inferring pathological states in cortical neuron microcircuits" J. Theor. Biol.386 (2015), 34-43 DOI: doi:10.1016/j.jtbi.2015.09.004
J. Rydzewski, W. Nowak "Memetic algorithms for ligand expulsion from protein cavities" J. Chem. Phys.143(12) (2015), 124101- DOI: 10.1063/1.4931181
J. Rydzewski, Wojciech Strzałka, W. Nowak "Nanomechanics of PCNA: A protein-made DNA sliding clamp" Chem. Phys. Lett.634 (2015), 236-242 DOI: doi:10.1016/j.cplett.2015.06.027
D. Rumiński, Sikorski Bartosz, D. Bukowska, M. Szkulmowski, Krawiec Krzysztof, Malukiewicz Grażyna, Bieganowski Lech, M. Wojtkowski "OCT angiography by absolute intensity difference applied to normal and diseased human retinas" Biomed. Opt. Express6 (2015), 2738-2754 DOI: 10.1364/BOE.6.002738
D. Rumiński, M. Szkulmowski, D. Borycki, I. Gorczyńska, M. Wojtkowski "OCT angiography guided by SLO eye tracker" Invest. Ophthal. Vis. Science56 (2015), 5967-5967
R. Jakubowski, J. Rydzewski, W. Nowak "On the role of metal ions in synaptic proteins assembly" Protein Sci. 24 (2015), 161-162
Jan K. Nowak, I. Grulkowski, K. Karnowski, M. Wojtkowski, Jarosław Walkowiak "Optical Coherence Tomography Identifies Lower Labial Salivary Gland Surface Density in Cystic Fibrosis" PLOS ONE10 (2015), e0117517-e0117517 DOI: 10.1371/journal.pone.0117517
Jan K. Nowak, I. Grulkowski, K. Karnowski, M. Wojtkowski, Jaroslaw Walkowiak "Optical Coherence Tomography of the Labial Salivary Glands Reveals Age-Related Differences in Women" Clin. Trans. Sci.8 (2015), 717-721 DOI: 10.1111/cts.12344
Andrzej J. Kulik, Małgorzata Lekka, Kyumin Lee, Grazyna Pyka-Fościak, W. Nowak "Probing fibronectin–antibody interactions using AFM force spectroscopy and lateral force microscopy" BEILSTEIN J NANOTECH6 (2015), 1164-1175 DOI: doi:10.3762/bjnano.6.118
Mariusz Tszydel, A. Zabłotni, D. Wojciechowska, M. Michalak, I. Krucińska, K. Szustakiewicz, M. Maj, Agata Jaruszewska, J. Strzelecki "Research on possible medical use of silk produced by caddisfly larvae of Hydropsyche angustipennis (Trichoptera, Insecta)" J MECH BEHAV BIOMED45 (2015), 142-153 DOI: http://dx.doi.org/10.1016/j.jmbbm.2015.02.003
Aly Abd-Ella, Maria Stankiewicz, K. Mikulska-Rumińska, W. Nowak, Cédric Pennetier, Mathilde Goulu, Carole Fruchart-Gaillard, Patricia Licznar, Véronique Apaire-Marchais, Olivier List, Vincent Corbel, Denis Servent, Bruno Lapied "The Repellent DEET Potentiates Carbamate Effects via Insect Muscarinic Receptor Interactions: An Alternative Strategy to Control Insect Vector-Borne Diseases" PLOS ONE10(5) (2015), e0126406-+20 DOI: DOI:10.1371/journal.pone.0126406
2014
A. Zawadzka, P. Płóciennik, J. Strzelecki " Temperature-dependent luminescence dynamics for ZnO thin films" Opt. Quantum Electron.46 (1) (2014), 87-101 DOI: 10.1007/s11082-013-9709-x
K. Kubiak-Ossowska, Mulheran Paul, W. Nowak "Fibronectin Module FNIII9 Adsorption at Contrasting Solid Model Surfaces Studied by Atomistic Molecular Dynamics" J. Phys. Chem. Bxx (2014), yy-zz DOI: 10.1021/jp5020077
A. Zawadzka, P. Płóciennik, J. Strzelecki, A. Korcala, A.K. Arof, B. Sahraoui "Impact of annealing process on stacking orientations and second order nonlinear optical properties of metallophthalocyanine thin films and nanostructures" Dyes Pigm.101 (2014), 212-220 DOI: 10.1016/j.dyepig.2013.09.044
P. Szroeder, Nikos G. Tsierkezos, Mariusz Walczyk, Włodzimierz Strupiński, A. Górska-Pukownik, J. Strzelecki, K. Wiwatowski, Peter Scharff, Uwe Ritter "Insights into electrocatalytic activity of epitaxial graphene on SiC from cyclic voltammetry and ac impedance spectroscopy" J. Solid State Electrochem. 18 (2014), 2555-2562 DOI: DOI 10.1007/s10008-014-2512-1
J. Strzelecki, Ł. Pepłowski, Lenartowski Robert, W. Nowak, A. Balter "Mechanical transition in a highly stretched and torsionally constrained DNA" Phys. Rev. E.89 (2014), 020701-1-020701-5 DOI: 10.1103/PhysRevE.89.020701
I. Grulkowski, K. Szulżycki, M. Wojtkowski "Microscopic OCT imaging with focus extension by ultrahigh-speed acousto-optic tunable lens and stroboscopic illumination" Opt. Express22 (2014), 31746-31760 DOI: 10.1364/OE.22.031746
K. Mikulska-Rumińska, J. Strzelecki, W. Nowak "Nanomechanics of β-rich proteins related to neuronal disorders studied by AFM, all-atom and coarse-grained MD methods" J. Mol. Model.20 (2014), 2144-2153 DOI: DOI: 10.1007/s00894-014-2144-5
Marek Jankowski, Katarzyna Wertheim-Tysarowska, R. Jakubowski, Justyna Sota, W. Nowak, Rafal Czajkowski "Novel KRT14 mutation causing epidermolysis bullosa simplex with variable phenotype" EXP DERMATOL23 (2014), 684-687 DOI: 10.1111/exd.12478
A. Zawadzka, P. Płóciennik, J. Strzelecki, Z. Łukasiak, B. Sahraoui "Photophysical Properties of Alq3 thin films" Opt. Mater.36 (2014), 91-97 DOI: 10.1016/j.optmat.2013.05.001
I. Grulkowski, mgr Nowak Jan, K. Karnowski, Żebryk Paweł , Puszczewicz Mariusz, prof. Walkowiak Jarosław, M. Wojtkowski "Quantitative assessment of oral mucosa and labial minor salivary glands in patients with Sjögren’s syndrome using swept source OCT" Biomed. Opt. Express5 (2014), 259-274 DOI: 10.1364/BOE.5.000259
K. Karnowski, I. Grulkowski, Nishant Mohan, Ian Cox, M. Wojtkowski "Quantitative optical inspection of contact lenses immersed in wet cell using swept source OCT" Opt. Lett.39 (2014), 4727-4730 DOI: 10.1364/OL.39.004727
A. Zawadzka, P. Płóciennik, J. Strzelecki, prof. B. Sahraoui "Transparent amorphous zinc oxide thin films for NLO applications" Opt. Mater.37 (2014), 327-337 DOI: 10.1016/j.optmat.2014.06.021
R. Jakubowski, Piotr Skrzyniarz, Ł. Pepłowski, W. Nowak "Transthyretin Induced Amyloidosis Interactions, Mechanisms and Potent Drugs Design" Biophys. J. Suppl. 106 (2014), 661a DOI: 10.1016/j.bpj.2013.11.3659
2013
M. Dąbrowski, W. Nowak, prof. dr hab. Stankiewicz Maria "An influence of neuroactive compounds on insect ion channels" Eur. Biophys. J. Biophys. Lett. Suppl.42 (2013), 79-79 DOI: 10.1007/s00249-013-0917-x
Ł. Pepłowski, Joanna Estkowska, W. Nowak "Electric field effects on EGF and bFGF ligand- receptor unbinding investigated by Steered MD method" Eur. Biophys. J. Biophys. Lett. Suppl.42 (Suppl 1) (2013), S94-S94 DOI: 10.1007/s00249-013-0917-x
I. Grulkowski, Jonathan J. Liu, Benjamin Potsaid, Vijaysekhar Jayaraman, James Jiang, James G. Fujimoto, Alex E. Cable "High precision, high accuracy ultralong range swept source OCT using VCSEL light source" Opt. Lett.38 (2013), 673-675 DOI: 10.1364/OL.38.000673
P. Miszta, S. C. Basak, R. Natarjan, W. Nowak "How Computational Studies of Mosquito Repellents Contribute to the Control of Vector Born Diseases" Current Computer-Aided Drug Design9(3) (2013), 300-307 DOI: 10.2174/15734099113099990018
Jonathan J. Liu, I. Grulkowski, Martin F. Kraus, Benjamin Potsaid, Chen D. Lu, Bernhard Baumann, Jay S. Duker, Joachim Hornegger, James G. Fujimoto "In vivo imaging of rodent eye with swept source / Fourier domain OCT" Biomed. Opt. Express4 (2013), 351-363 DOI: 10.1364/BOE.4.000351
Anna Gogolińska, W. Nowak "Molecular basis of lateral force spectroscopy nano-diagnostics: computational unbinding of autism related chemokine MCP-1 from IgG antibody" J. Mol. Model.Volume 19, Issue 11 (2013), 4773-4780 DOI: 10.1007/s00894-013-1972-z
K. Mikulska-Rumińska, W. Nowak "Nanomechanics of proteins related to autism spectrum disorder" Eur. Biophys. J. Biophys. Lett. Suppl.42 (Suppl 1) (2013), S94 DOI: DOI 10.1007/s00249-013-0917-x
D. Rumiński, D. Bukowska, Bartosz Sikorski, I. Gorczyńska, D. Borycki, M. Szkulmowski, M. Wojtkowski "OCT angiography as a noinvasive tool for volumetric imaging of retinal microangiopathy" Invest. Ophthal. Vis. Science54 (2013), 36-36
K. Mikulska-Rumińska, R. Jakubowski, Ł. Pepłowski, M. Dąbrowski, A. Gogolińska, Włodzisław Duch, W. Nowak "On applications of virtual atomic force microscope in studies of brain proteins" Eur. Biophys. J. Biophys. Lett. Suppl. 42 (Suppl 1) (2013), S93-S93 DOI: DOI 10.1007/s00249-013-0917-x
D. Borycki, M. Szkulmowski, D. Rumiński, D. Bukowska, Bartosz Sikorski, I. Gorczyńska, A. Kowalczyk, M. Wojtkowski "Scale-and rotation-invariant fundus tracking system for noninvasive OCT retinal micro-capillary network visualization and retinal disease progression OCT measurements" Invest. Ophthal. Vis. Science54 (2013), 1497-1497
D. Bielińska-Wąż, dr Wąż Piotr, prof. Clark Timothy, dr hab. Puzyn Tomasz, Ł. Pepłowski, W. Nowak "Statistical properties of spectra of chloronaphthalenes" J. Math. Chem.51 (2013), 857-867 DOI: 10.1007/s10910-012-01117-4
A. Zawadzka, P. Płóciennik, J. Strzelecki, M. Pranaitis, S. Dabos-Seignon, B. Sahraoui "Structural and nonlinear optical properties of as-grown and annealed metallophthalocyanine thin films" Thin Solid Films545 (2013), 429-437 DOI: 10.1016/j.tsf.2013.07.042
2012
J. Strzelecki, M. Dąbrowski, dr Strzelecka Joanna, dr Tszydel Mariusz, K. Mikulska-Rumińska, W. Nowak, A. Balter "AFM Investigation of Biological Nanostructures" Acta Phys. Pol. A122 (2012), 329-332
A. Jasiński, K. Mikulska-Rumińska, B. Krajnik, S. Maćkowski, W. Nowak "Dynamics of Protein Elements of Hybrid Nanostructures - Molecular Dynamics Simulations of Light Harvesting Peridinin-Chlorophyll a-Protein Model " Acta Phys. Pol. A122 (2012), 284-288
M. Dąbrowski, W. Nowak, Jankowska Milena, prof. dr hab. Stankiewicz Maria "How experimental conditions can influence the effects of toxins binding to "site 3" on sodium channel - electrophysiological observations" Acta Neurobiol. Exp.72 (2012), 199-199
K. Ciszak, M. Olejnik, J. Strzelecki, B. Krajnik, D. Piątkowski, E. Hofmann, S. Maćkowski "Influence of plasmon resonance in silver island film on peridinin-chlorophyll-protein light-harvesting complexes" Acta Phys. Pol. A122 (2012), 275-278
D. Bukowska, D. Rumiński, D. Szlag, I. Grulkowski, Jakub Włodarczyk, M. Szkulmowski, Grzegorz Wilczyński, I. Gorczyńska, M. Wojtkowski "Multi-parametric imaging of murine brain using spectral and time domain optical coherence tomography" J.Biomed. Opt.17 (2012), 101515-1-101515-4 DOI: 10.1117/1.JBO.17.10.101515]
K. Mikulska-Rumińska, J. Strzelecki, A. Balter, W. Nowak "Nanomechanical unfolding of α-neurexin - a major component of the synaptic junction" Chem. Phys. Lett.521 (2012), 134-137 DOI: 10.1016/j.cplett.2011.11.033
I. Grulkowski, Jonathan J. Liu, Benjamin Potsaid, Vijaysekhar Jayaraman, Chen D. Lu, James Jiang, Alex E. Cable, Jay S. Duker, James G. Fujimoto "Retinal, anterior segment and full eye imaging using ultrahigh speed swept source OCT with vertical-cavity surface emitting lasers" Biomed. Opt. Express3 (2012), 2733-2751 DOI: 10.1364/BOE.3.002733
A. Górska-Pukownik, S. Meyer, A. Balter "The Silver Colloidal Solutions and Films for Efficient SERS" Acta Phys. Pol. A122 (2012), 350-352
2011
Ł. Pepłowski, Sikora Mateusz, W. Nowak, Cieplak Marek " Molecular jamming—The cystine slipknot mechanical clamp in all-atom simulations " J. Chem. Phys.134 (2011), 085102-085116 DOI: doi:10.1063/1.3553801
D. Rumiński, M. Szkulmowski, I. Gorczyńska, K. Karnowski, A. Kowalczyk, M. Wojtkowski "Comparison Of Intensity Decorrelation Technique And Joint Spectral And Time Domain Optical Coherence Tomography For Retinal And Choroidal Vessel Detection" Invest. Ophthal. Vis. Science52 (2011), 2860-2860
I. Grulkowski, Jonathan J. Liu, Bernhard Baumann, Benjamin Potsaid, Chen D. Lu, James G. Fujimoto "Imaging limbal and scleral vasculature using Swept Source Optical Coherence Tomography" Photonics Lett. Poland3 (2011), 132-134 DOI: 10.4302/plp.2011.4.02
Ł. Pepłowski, R. Jakubowski, W. Nowak "Molecular dynamics study of bNeurexin-Neuroligin interactions" Eur. Biophys. J. Biophys. LettVolume 40, Supplement 1 (2011), S114-S114 DOI: 10.1007/s00249-011-0734-z
Anna Gogolińska, W. Nowak "Molecular recognition at atomic level: interaction of autism related protein MCP-1 with an antibody" Eur. Biophys. J. Biophys. Lett40 (2011), S106-S106 DOI: 10.1007/s00249-011-0734-z
K. Mikulska-Rumińska, Ł. Pepłowski, W. Nowak "Nanomechanics of Ig-like domains of human contactin (BIG-2)" J. Mol. Model.17 (2011), 2313-2323 DOI: 10.1007/s00894-011-1010-y
K. Mikulska-Rumińska, J. Strzelecki, A. Balter, W. Nowak "Nanomechanics of neuronal junction – stretching FNIII domains of human contactins" Eur. Biophys. J. Biophys. Lett40 (2011), S220-S220 DOI: 10.1007/s00249-011-0729-9
J. Strzelecki, J. Strzelecka, K. Mikulska-Rumińska, M.Tszydel, A. Balter, W. Nowak "Nanomechanics of new materials - AFM and computer modelling studies of trichoptera silk" Cent. Eur. J. Phys.9 (2) (2011), 482-491
I. Gorczyńska, M. Szkulmowski, D. Szlag, I. Grulkowski, D. Bukowska, Bartosz Sikorski, A. Kowalczyk, M. Wojtkowski "Slow Blood Flow Measurement in Retinal Vessels with Ultrahigh Speed OCT System" Invest. Ophthal. Vis. Science52 (2011), 1717-1717
2010
A. Górska-Pukownik, Małgorzata Hermanowska, A. Balter, Beate Klösgen "Deposition of Model Biomimetic Membranes on a Soft Support" Biophys. J. Suppl. 98 (3) Suppl.1 (2010), 271a-272a
B. J. Kałużny, M. Góra, K. Karnowski, I. Grulkowski, A. Kowalczyk, M. Wojtkowski "Imaging of the Lens Capsule with Ultrahigh Resolution Spectral Optical Coherence Tomography Prototype Based on a Femtosecond Laser" Brit. J. Ophthalmol.94 (2010), 275-277
D. Bukowska, I. Grulkowski, S. Tamborski, I. Gorczyńska, M. Szkulmowski, A. Kowalczyk, M. Wojtkowski "Influence of Blood Inhomogeneity on Doppler OCT Signals in Retinal Capillary System " Invest. Ophthal. Vis. Science51 (2010), 1052-1052
S. Ortiz, D. Siedlecki, I. Grulkowski, L. Remon, D. Pascual, M. Wojtkowski, S. Marcos "Optical distortion correction in Optical Coherence Tomography for quantitative ocular anterior segment by three-dimensional imaging" Opt. Express18 (2010), 2782-2796
2009
J. Strzelecki, K. Mikulska-Rumińska, Małgorzata Lekka, Andrzej Kulik, A. Balter, W. Nowak "AFM force spectroscopy and steered molecular dynamics simulation of protein Contactin 4" Acta Phys. Pol. A Suppl.116 (2009), 156-159
I. Grulkowski, M. Góra, M. Szkulmowski, I. Gorczyńska, D. Szlag, S. Marcos, A. Kowalczyk, M. Wojtkowski "Anterior segment imaging with Spectral OCT system using a high-speed CMOS camera" Opt. Express17(6) (2009), 4842–-4858
M. Szkulmowski, I. Grulkowski, D. Szlag, A. Szkulmowska, A. Kowalczyk, M. Wojtkowski "Flow velocity estimation by complex ambiguity free joint Spectral and Time domain Optical Coherence Tomography" Opt. Express17 (2009), 14281-14297
W. Nowak "Intracellular nanomanipulation by a photonic-force microscope with real-time acquisition of a 3D stiffness matrix" Nanotechnology20 (2009), 285709-285718
I. Grulkowski, I. Gorczyńska, M. Szkulmowski, D. Szlag, A. Szkulmowska, A. Leitgeb, M. Wojtkowski, A. Kowalczyk "Scanning protocols dedicated to smart velocity ranging in Spectral OCT" Opt. Express17 (2009), 23736-23754
J. Strzelecki, K. Mikulska-Rumińska, A. Balter, W. Nowak "Single molecule AFM force spectroscopy and steered molecular dynamics of Contactin-4 protein" Eur. Biophys. J. Biophys. Lett. Suppl.38 (Suppl 1) (2009), S117-S117
M. Góra, I. Grulkowski, M. Szkulmowski, B. J. Kaluzny, M. Sylwestrzak, S. Marcos, A. Kowalczyk, M. Wojtkowski "Three Dimensional Anterior Segment Imaging During Accommodation Using High Speed Optical Coherence Tomography" Invest. Ophthal. Vis. Science50 (2009), 5798-5798
I. Gorczyńska, I. Grulkowski, D. Szlag, M. Szkulmowski, J. G. Fujimoto, A. Kowalczyk, M. Wojtkowski "Ultrahigh Speed OCT Imaging Using Joined Spectral and Time Domain (STd OCT) Method for Enhanced Visualization of Retinal Vessels and Blood Flow Detection" Invest. Ophthal. Vis. Science50 (2009), 1384-1384
2008
Ł. Pepłowski, K. Kubiak-Ossowska, S. Zelek, W. Nowak "A Comparative DFT Study of Substrates and Products of Industrial Enzyme Nitrile Hydratase" Int. J. Quantum Chem.108 (2008), 161-179
Ł. Pepłowski, K. Kubiak-Ossowska, W. Nowak "Mechanical aspects of nitrile hydratase enzymatic activity. Steered molecular dynamics simulations of Pseudonocardia thermophila JCM 3095" Chem. Phys. Lett.467 (2008), 144-149
K. Kubiak-Ossowska, W. Nowak "Molecular Dynamics Simulations of The Photoactive Protein Nitrile Hydratase" Biophys. J.94 (2008), 3824-3838
D. Bielińska-Wąż, W. Nowak, Ł. Pepłowski, P. Wąż, S.C. Basak, R. Natarajan "Statistical spectroscopy as a tool for the study of molecular similarity" J. Math. Chem.43 (2008), 1560-1572
D. Bielińska-Wąż, T.Clark, P. Wąż, W. Nowak, A.Nandy "2D-dynamic representation of DNA sequences" Chem. Phys. Lett.442 (2007), 140-144
D. Bielińska-Wąż, W. Nowak, P.Wąż, A.Nandy, T.Clark "Distribution moments of 2D-graphs as descriptors of DNA sequences" Chem. Phys. Lett.443 (2007), 408-413
Ł. Pepłowski, K. Kubiak-Ossowska, W. Nowak "Insights into catalytic activity of industrial enzyme Co-nitrile hydratase. Docking studies of nitriles and amides" J. Mol. Model.13 (2007), 725-730
W. Nowak "Introduction to Stochastic Search and Optimization. Estimation, Simulation, and Control" IEEE Trans/ Neural Net.18 (2007), 964-965
S. Orłowski, W. Nowak "Locally enhanced sampling molecular dynamics study of the dioxygen transport in human Cytoglobin" J. Mol. Model.13 (2007), 715-723
S. Orłowski, W. Nowak "Oxygen Diffusion in Minihemoglobin from cerebratus lacteus - a Locally Enhanced Sampling Study" Theor. Chem. Acc.117 (2007), 253-258
S.C. Basak, R. Natarajan, W. Nowak, P. Miszta, J. Klun "Three dimensional structure-activity relationships (3D-QSAR) for insect repellency of diastereomeric compounds: A hierarchical molecular overlay approach" SAR QSAR Environ Res.18 (2007), 237-250 DOI: 10.1080/10629360701303784
2006
prof. dr hab Danuta Frąckowiak, A. Balter, J. Karolczak, P. Siejak "Influence of silver colloid on fluorescein spectral properties" Acta Phys. Pol. A110(4) (2006), 451-458
2004
Z.Lu, W. Nowak, G.Lee, P.Marszalek, W.Yang "Elastic properties of single amylose chains in water: a quantum mechanical and AFM study" J. Am. Chem. Soc.126 (2004), 9033-9041
G.Lee, W. Nowak, J.Jaroniec, Q.Zhang, P.E.Marszalek "Molecular dynamics simulations of forced conformational transitions in 1,6-linked polysaccharides" Biophys. J.87 (2004), 1456-1465
G.Lee, W. Nowak, J.Jaroniec, Q.Zhang, P.E.Marszalek "Nanomechanical Control of Glucopyranose Rotamers" J. Am. Chem. Soc.126 (2004), 6218-6219
2003
K. Kubiak-Ossowska, Malgorzata Kowalska, W. Nowak "Molecular dynamics Study of Early Events During Photooxidation of Eye Lens Protein γB-crystallin" J. Mol. Struct.630 (2003), 315 -325
2002
W. Nowak "Density Functional Study on Geometry and Electronic Structure of Nitrile Hydratase Active Site Model" Int. J. Quantum Chem.90 (2002), 1174-1187
2001
W. Nowak, V.Cody, A.Wojtczak "Computer modeling studies of the structural role of NADPH binding to active site mutants of human dihydrofolate reductase in complex with piretrexim" Acta Biochim. Pol.48 (2001), 903-916
1999
Kamińska Alina, Kowalska Małgorzata, A. Balter "A comparative study of the effect of exogenous and endogenous photostabilizers in the lens crystallin photodegradation" J. Fluoresc.9 (1999), 213-219
Szubiakowski Jacek, A. Balter, W. Nowak, Wiśniewski Krzysztof, Aleksandrzak Krzysztof "Substituent-sensitive anisotropic rotations of 9-acetoxy-10-phenylanthracenes. Fluorescence anisotropy decay and quantum-mechanical study " Chem. Phys. Lett.313 (1999), 473-483
